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BaseInfo

ncRNA ID	novel_ath_miR1057
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:4820406-4820492 [-]
Reference genome	TAIR10
Source	SRR1266870
Length	22
Mature sequence(if miRNA)	66 - UCUUCUCCAAAUAGUUUAGGUU - 87
Stem-loop(if miRNA)	--       C        U      G   ACAUAUAAUAAU  A   UCUUCUC AAAUAGUU AGGUUA CUG            UC A   ||||||| |||||||| |||||| |||            ||   AGAAGAG UUUAUCAA UCCAAU GAC            AG U GA       U        -      A   CUCUUUGACCCC  A
Stem-loop sequence	UCUUCUCCAAAUAGUUUAGGUUAGCUGACAUAUAAUAAUUCAAUAGACCCCAGUUUCUCCAGAUAACCUAACUAUUUUGAGAAGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK221156.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:105   AAACUAAAAUAUUUGGAGAAGU   126 Target Full Sequence	2.0	Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-95-C22	NA	coding protein	psRNATarget
AY140094.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:1369   AAACUAAAAUAUUUGGAGAAGU   1390 Target Full Sequence	2.0	Arabidopsis thaliana unknown protein mRNA, complete cds	NA	coding protein	psRNATarget
AY037180.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:1605   AAACUAAAAUAUUUGGAGAAGU   1626 Target Full Sequence	2.0	Arabidopsis thaliana At1g52380/F19K6_4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_104116.4	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:1638   AAACUAAAAUAUUUGGAGAAGU   1659 Target Full Sequence	2.0	Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA	NUP50 (Nucleoporin 50 kDa) protein(AT1G52380)	coding protein	psRNATarget
NM_001333541.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:1837   AAACUAAAAUAUUUGGAGAAGU   1858 Target Full Sequence	2.0	Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA	NUP50 (Nucleoporin 50 kDa) protein(AT1G52380)	coding protein	psRNATarget
NM_001333543.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:2076   AAACUAAAAUAUUUGGAGAAGU   2097 Target Full Sequence	2.0	Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA	NUP50 (Nucleoporin 50 kDa) protein(AT1G52380)	coding protein	psRNATarget
NM_001333542.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   ||*|||||*||||||||||||* targets:2218   AAACUAAAAUAUUUGGAGAAGU   2239 Target Full Sequence	2.0	Arabidopsis thaliana NUP50 (Nucleoporin 50 kDa) protein mRNA	NUP50 (Nucleoporin 50 kDa) protein(AT1G52380)	coding protein	psRNATarget
NM_001203088.2	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   **|=||||||=||||||||||| targets:2702   CUCUUAAACUGUUUGGAGAAGA   2723 Target Full Sequence	2.5	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT3G45850)	coding protein	psRNATarget
NM_114454.3	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   **|=||||||=||||||||||| targets:2847   CUCUUAAACUGUUUGGAGAAGA   2868 Target Full Sequence	2.5	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT3G45850)	coding protein	psRNATarget
NM_119819.1	ncRNA:22   UUGGAUUUGAUAAACCUCUUCU   1   **==||||||*||||||||||| targets:91   UUUUUAAACUUUUUGGAGAAGA   112 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein partial mRNA	transmembrane protein(AT4G36560)	coding protein	psRNATarget