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BaseInfo

ncRNA ID	novel_ath_miR1055
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:7207442-7207564 [-]
Reference genome	TAIR10
Source	SRR1266870
Length	24
Mature sequence(if miRNA)	100 - GACAUGUGUCAUGAUCUCGUGAUU - 123
Stem-loop(if miRNA)	--G  -                   UUUAC   UAAGA     UAU      A   CAA      U    AC AUGUGUCAUGAUCUCGUGA     GGU     UUUUG   AAAUCG AUU   AUGUAA U    || |||||||||||||||||||     |||     |||||   |||||| |||   ||||||    UG UGCACAGUACUAGAGCACU     UCA     AAAAC   UUUGGC UGA   UAUAUU U AAA  A                   --UAA   --UUG     ---      A   -AA      A
Stem-loop sequence	GACAUGUGUCAUGAUCUCGUGAUUUACGGUUAAGAUUUUGUAUAAAUCGAAUUCAAAUGUAAUUUAUUAUAUAAAGUACGGUUUCAAAAGUUACUAAUUCACGAGAUCAUGACACGUAGUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX824946.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:1646   GCCGAGGAGAUCAUGACACGUGUC   1669 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZA01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT046186.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:1924   GCCGAGGAGAUCAUGACACGUGUC   1947 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At3g61680) mRNA, complete cds	NA	coding protein	psRNATarget
AK228526.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:2248   GCCGAGGAGAUCAUGACACGUGUC   2271 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-21-E24	NA	coding protein	psRNATarget
BT008609.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:2248   GCCGAGGAGAUCAUGACACGUGUC   2271 Target Full Sequence	2.5	Arabidopsis thaliana clone RAFL15-21-E24 (R20500) unknown protein (At3g61680) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001340118.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:2235   GCCGAGGAGAUCAUGACACGUGUC   2258 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein mRNA	alpha/beta-Hydrolases superfamily protein(AT3G61680)	coding protein	psRNATarget
NM_116033.5	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:2340   GCCGAGGAGAUCAUGACACGUGUC   2363 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein mRNA	alpha/beta-Hydrolases superfamily protein(AT3G61680)	coding protein	psRNATarget
NM_001340117.1	ncRNA:24   UUAGUGCUCUAGUACUGUGUACAG   1   =***|*|||||||||||||=|||| targets:2446   GCCGAGGAGAUCAUGACACGUGUC   2469 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein mRNA	alpha/beta-Hydrolases superfamily protein(AT3G61680)	coding protein	psRNATarget