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BaseInfo

ncRNA ID	novel_ath_miR1054
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:7878658-7878748 [-]
Reference genome	TAIR10
Source	SRR1266869
Length	21
Mature sequence(if miRNA)	71 - UCAUUGAGUGCAUCGUUGAUG - 91
Stem-loop(if miRNA)	--UC          U          AUUU     A   ----U    CA     AUUGAGUGCA CGUUGAUGUA    UACUU UUU     AUUC  U     |||||||||| ||||||||||    ||||| |||     ||||  U     UAACUUACGU GCGACUAUAU    AUGAA AAA     UAAG  G GUAU          U          ----     G   UUAAU    UU
Stem-loop sequence	UCAUUGAGUGCAUCGUUGAUGUAAUUUUACUUAUUUUAUUCCAUUGUUGAAUUAAUUAAAGAAGUAUAUAUCAGCGUUGCAUUCAAUUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_128470.5	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   *|||||=|*|||||||||||| targets:785   AAUCAAUGCUGCACUCAAUGA   805 Target Full Sequence	2.5	Arabidopsis thaliana laccase 2 (LAC2), mRNA	laccase 2(LAC2)	coding protein	psRNATarget
DQ652845.1	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   ==|||*|||||||=||||||| targets:123   UGUCACCGAUGCAUUCAAUGA   143 Target Full Sequence	2.5	Arabidopsis thaliana clone 0000016367_0000011454 unknown mRNA	NA	coding protein	psRNATarget
DQ446263.1	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   ==|||*|||||||=||||||| targets:123   UGUCACCGAUGCAUUCAAUGA   143 Target Full Sequence	2.5	Arabidopsis thaliana clone pENTR221-At1g19500 hypothetical protein (At1g19500) mRNA, complete cds	NA	coding protein	psRNATarget
AY800587.1	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   ==|||*|||||||=||||||| targets:160   UGUCACCGAUGCAUUCAAUGA   180 Target Full Sequence	2.5	Arabidopsis thaliana clone H0000001131 hypothetical protein (AT1G19500) mRNA, complete cds	NA	coding protein	psRNATarget
NM_101807.4	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   ==|||*|||||||=||||||| targets:271   UGUCACCGAUGCAUUCAAUGA   291 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT1G19500)	coding protein	psRNATarget
NM_001341215.1	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   =*|||||||||*||||||||= targets:1327   UUUCAACGAUGGACUCAAUGG   1347 Target Full Sequence	2.5	Arabidopsis thaliana G2484-1 protein (G2484-1), mRNA	G2484-1 protein(G2484-1)	coding protein	psRNATarget
NM_117837.7	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   =*|||||||||*||||||||= targets:1560   UUUCAACGAUGGACUCAAUGG   1580 Target Full Sequence	2.5	Arabidopsis thaliana G2484-1 protein (G2484-1), mRNA	G2484-1 protein(G2484-1)	coding protein	psRNATarget
NM_001341214.1	ncRNA:21   GUAGUUGCUACGUGAGUUACU   1   =*|||||||||*||||||||= targets:1587   UUUCAACGAUGGACUCAAUGG   1607 Target Full Sequence	2.5	Arabidopsis thaliana G2484-1 protein (G2484-1), mRNA	G2484-1 protein(G2484-1)	coding protein	psRNATarget