Search result

BaseInfo

ncRNA ID novel_ath_miR1053
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:15611883-15611974 [+]
Reference genome TAIR10
Source SRR1266869;SRR1266870;SRR1266871;SRR1312896
Length 21
Mature sequence(if miRNA) 1 - UGAGAUGAAAUCUUUGAUUGG - 21
Stem-loop(if miRNA) --                     A      ----AU   GACGAUGCU
  UGAGAUGAAAUCUUUGAUUGG AAUUUC      GUA         A
  ||||||||||||||||||||| ||||||      |||
  AUUCUACUUUAGAAAUUAACC UUAAAG      AGU         U
UC                     C      AAAACC   AUACCCCAC
Stem-loop sequence UGAGAUGAAAUCUUUGAUUGGAAAUUUCAUGUAGACGAUGCUAUCACCCCAUAUGACCAAAAGAAAUUCCCAAUUAAAGAUUUCAUCUUACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001336640.1
ncRNA:21   GGUUAGUUUCUAAAGUAGAGU   1
  |||||=|||||||||||||=|
targets:1698   CCAAUUAAAGAUUUCAUCUUA   1718

2.5 Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein mRNA Transducin/WD40 repeat-like superfamily protein(AT2G37160) coding protein psRNATarget