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BaseInfo

ncRNA ID novel_ath_miR1052
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:18548142-18548325 [-]
Reference genome TAIR10
Source ERR1297320
Length 24
Mature sequence(if miRNA) 1 - GUGACUAUUUUGCAAAUUAUGAAU - 24
Stem-loop(if miRNA) --                                                                               ---   U    G
  UCAUAAUUUGCAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAUGUA   AAA GUAC C
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||| U
  AGUAUUAAACGUUUUAUCAGUGAAAAGUGACAAACUAAGCAUGUGAACCUAACAUGUAGUGAAAAUCACAUGUUUAUAU   UUU UAUG G
UA                                                                               AUA   U    U
Stem-loop sequence UCAUAAUUUGCAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAUGUAAAAUGUACGCUGUGUAUUUUUAUAUAUAUUUGUACACUAAAAGUGAUGUACAAUCCAAGUGUACGAAUCAAACAGUGAAAAGUGACUAUUUUGCAAAUUAUGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105281.3
ncRNA:24   UAAGUAUUAAACGUUUUAUCAGUG   1
  |||||*||||||||||=|||||||
targets:946   AUUCAAAAUUUGCAAAGUAGUCAC   969

2.5 Arabidopsis thaliana Plant thionin mRNA Plant thionin(AT1G66100) coding protein psRNATarget