Search result

BaseInfo

ncRNA ID	novel_ath_miR1051
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:7423524-7423609 [+]
Reference genome	TAIR10
Source	SRR1266869
Length	21
Mature sequence(if miRNA)	1 - UUAGAGUUUUCUGGAUACUUA - 21
Stem-loop(if miRNA)	---                     UU     C  A A     A    UUAGAGUUUUCUGGAUACUUA  AGUUA UA C AAGAG G    |||||||||||||||||||||  ||||| || | ||||| G    AAUCUCAAAAGACCUAUGAAU  UCAAU AU G UUCUU G UUA                     UU     U  A C     C
Stem-loop sequence	UUAGAGUUUUCUGGAUACUUAUUAGUUACUAACAAAGAGAGGGCUUCUUCGAUAUUAACUUUUAAGUAUCCAGAAAACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY086502.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:154   CUAGUAUCCAGAAAACUCUAG   174 Target Full Sequence	1.0	Arabidopsis thaliana clone 25501 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_122255.6	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1237   CUAGUAUCCAGAAAACUCUAG   1257 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343809.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1330   CUAGUAUCCAGAAAACUCUAG   1350 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein partial mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343808.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1370   CUAGUAUCCAGAAAACUCUAG   1390 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343807.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1576   CUAGUAUCCAGAAAACUCUAG   1596 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343806.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1576   CUAGUAUCCAGAAAACUCUAG   1596 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343805.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1689   CUAGUAUCCAGAAAACUCUAG   1709 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget