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BaseInfo

ncRNA ID novel_ath_miR1002
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:12217455-12217513 [-]
Reference genome TAIR10
Source SRR1266004
Length 21
Mature sequence(if miRNA) 1 - CGGCUCUGAUACCAAUUGAUG - 21
Stem-loop(if miRNA) --       C          A   CU  G
  UCGAUUG UGUCAGAGCC CGC  AU A
  ||||||| |||||||||| |||  || A
  AGUUAAC AUAGUCUCGG GUG  UA G
GU       C          C   UU  A
Stem-loop sequence UCGAUUGCUGUCAGAGCCACGCCUAUGAAGAAUUUGUGCGGCUCUGAUACCAAUUGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY168992.1
ncRNA:21   GUAGUUAACCAUAGUCUCGGC   1
  =||||=*|||||||||||||*
targets:565   UAUCAGAUGGUAUCAGAGCCU   585

3.0 Arabidopsis thaliana hypothetical protein (T17H1.21) mRNA, complete cds NA coding protein psRNATarget