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BaseInfo

ncRNA ID	novel_ath_miR998
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:2535433-2535652 [-]
Reference genome	TAIR10
Source	SRR1266003;SRR1266004
Length	21
Mature sequence(if miRNA)	200 - UUGAAAGAUUUACAAGGGAUU - 220
Stem-loop(if miRNA)	--UU                                                     U     G             UAA    U  --AC    A     -AAA     UA     GAAAGAUUUACAAGGGAUUUUAAAAGGGUUUUAAAAGAUUUACAAGAGAUUUU AAAGG UUUGAAAGGGUUU   AAGA GU    AAGG UUUUU    AGAUU  U     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||   |||| ||    |||| |||||    |||||  A     UUUUCUAAAUGUUCCCUAAAAUUUUCCCAAAAUUUUUUAAAUGUUCUCUAAAA UUUCC AAAUUUUUCUAAA   UUCU CA    UUCC AGAAG    UUUAA  A AAAU                                                     U     A             -UG    -  AAAU    C     AACA     UA
Stem-loop sequence	UUGAAAGAUUUACAAGGGAUUUUAAAAGGGUUUUAAAAGAUUUACAAGAGAUUUUUAAAGGGUUUGAAAGGGUUUUAAAAGAUGUACAAGGAUUUUUAAAAGAUUUAUAAAUAAUUUACAAGAAGACCCUUUAAAACUCUUGUAAAUCUUUUUAAAACCUUUUAAAAUCUCUUGUAAAUUUUUUAAAACCCUUUUAAAAUCCCUUGUAAAUCUUUUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_129631.3	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1122   CGUGUUUUGUAAAUCUUUCAA   1142 Target Full Sequence	3.0	Arabidopsis thaliana NAD-dependent glycerol-3-phosphate dehydrogenase family protein (GLY1), mRNA	NAD-dependent glycerol-3-phosphate dehydrogenase family protein(GLY1)	coding protein	psRNATarget
NM_001336857.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1196   CGUGUUUUGUAAAUCUUUCAA   1216 Target Full Sequence	3.0	Arabidopsis thaliana NAD-dependent glycerol-3-phosphate dehydrogenase family protein (GLY1), mRNA	NAD-dependent glycerol-3-phosphate dehydrogenase family protein(GLY1)	coding protein	psRNATarget
NM_001336858.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1122   CGUGUUUUGUAAAUCUUUCAA   1142 Target Full Sequence	3.0	Arabidopsis thaliana NAD-dependent glycerol-3-phosphate dehydrogenase family protein (GLY1), mRNA	NAD-dependent glycerol-3-phosphate dehydrogenase family protein(GLY1)	coding protein	psRNATarget
AY050968.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1085   CGUGUUUUGUAAAUCUUUCAA   1105 Target Full Sequence	3.0	Arabidopsis thaliana putative glycerol-3-phosphate dehydrogenase (At2g40690) mRNA, complete cds	NA	coding protein	psRNATarget
BX820451.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1072   CGUGUUUUGUAAAUCUUUCAA   1092 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZD08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX820954.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1071   CGUGUUUUGUAAAUCUUUCAA   1091 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY114078.1	ncRNA:21   UUAGGGAACAUUUAGAAAGUU   1   *=|*==||||||||||||||| targets:1007   CGUGUUUUGUAAAUCUUUCAA   1027 Target Full Sequence	3.0	Arabidopsis thaliana putative glycerol-3-phosphate dehydrogenase (At2g40690) mRNA, complete cds	NA	coding protein	psRNATarget